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Publications (My NCBI Bibliography | Google Scholar Citation List):

59. Griffith M*, Spies NC*, Krysiak K*, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, Jones MR, Bilski RL, Lesurf R, Feng YY, Shah NM, Bonakdar M, Trani L, Matlock M, Ramu A, Campbell KM, Spies GC, Graubert AP, Gangavarapu K, Eldred JM, Larson DE, Walker JR, Good BM, Wu C, Su AI, Dienstmann R, Margolin AA, Tamborero D, Lopez-Bigas N, Jones SJ, Bose R, Spencer DH, Wartman LD, Wilson RK, Mardis ER, Griffith OL. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics. 2017 Jan 31;49(2):170-174.
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58. Krysiak K, Gomez F, White BS, Matlock M, Miller CA, Trani L, Fronick CC, Fulton RS, Kreisel F, Cashen AF, Carson KR, Berrien-Elliott MM, Bartlett NL, Griffith M, Griffith OL, Fehniger TA. Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma. Blood. 2016 Nov 14. pii: blood-2016-07-729954.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (2)


57. Zolkind P, Dunn GP, Lin T, Griffith M, Griffith OL, Uppaluri R. Neoantigens in immunotherapy and personalized vaccines: Implications for head and neck squamous cell carcinoma. Oral Oncology. 2016 Oct 14. pii: S1368-8375(16)30175-0.
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56. Skidmore ZL, Wagner AH, Lesurf R, Campbell KM, Kunisaki J, Griffith OL, Griffith M. GenVisR: Genomic Visualizations in R. Bioinformatics. 2016 Oct 1;32(19):3012-4.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (2)


55. Ainscough BJ, Griffith M, Coffman AC, Wagner AH, Kunisaki J, Choudhary MN, McMichael JF, Fulton RS, Wilson RK, Griffith OL, Mardis ER. DoCM: a database of curated mutations in cancer. Nature Methods. 2016 Sep 29;13(10):806-7.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (1)


54. Griffith OL, Chan SR, Griffith M, Krysiak K, Skidmore ZL, Hundal J, Allen JA, Arthur CD, Runci D, Bugatti M, Miceli AP, Schmidt H, Trani L, Kanchi KL, Miller CA, Larson DE, Fulton RS, Vermi W, Wilson RK, Schreiber RD, Mardis ER. Truncating Prolactin Receptor Mutations Promote Tumor Growth in Murine Estrogen Receptor-Alpha Mammary Carcinomas. Cell Reports. 2016 Sep 27;17(1):249-60.
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53. Miller CA, Gindin Y, Lu C, Griffith OL, Griffith M, Shen D, Hoog J, Li T, Larson DE, Watson M, Davies SR, Hunt K, Suman VJ, Snider J, Walsh T, Colditz GA, DeSchryver K, Wilson RK, Mardis ER, Ellis MJ. Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers. Nature Communications.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (6)


52. Griffith M, Griffith OL, Krysiak K, Skidmore ZL, Christopher MJ, Klco JM, Ramu A, Lamprecht TL, Wagner AH, Campbell KM, Lesurf R, Hundal J, Zhang J, Spies NC, Ainscough BJ, Larson DE, Heath SE, Fronick C, O'Laughlin S, Fulton R, Magrini V, McGrath S, Smith SM, Miller CA, Maher CA, Payton JE, Walker JR, Eldred JM, Walter MJ, Link DC, Graubert TA, Westervelt P, Kulkarni S, DiPersio JF, Mardis ER, Wilson RK, Ley TJ. Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia. Experimental Hematology. 2016 Jul;44(7):603-13.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (2)


51. Krysiak K, Christopher MJ, Skidmore ZL, Demeter RT, Magrini V, Kunisaki J, O'Laughlin M, Duncavage EJ, Miller CA, Ozenberger BA, Griffith M, Wartman LD, and Griffith OL. A genomic analysis of Philadelphia chromosome-negative AML arising in patients with CML.. Blood Cancer Journal. 2016 Apr 8;6:e413.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (1)


50. Ma CX, Luo J, Naughton M, Ademuyiwa FO, Suresh R, Griffith M, Griffith OL, Skidmore Z, Spies NC, Ramu A, Trani L, Pluard T, Nagaraj G, Thomas SN, Guo Z, Hoog J, Han J, Mardis ER, Lockhart AC, Ellis MJ. A phase 1 trial of BKM120 (Buparlisib) in combination with fulvestrant in postmenopausal women with estrogen receptor positive metastatic breast cancer. Clinical Cancer Research. 2015 Nov 12. pii: clincanres.1745.2015.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (19)


49. Griffith OL*, Griffith M*, Krysiak K*, Magrini V, Ramu A, Skidmore ZL, Kunisaki J, Austin R, McGrath S, Zhang J, Demeter R, Graves T, Eldred JM, Walker J, Larson DE, Maher CA, Lin Y, Chapman W, Mahadevan A, Miksad R, Nasser I, Hanto DW, Mardis ER. A genomic case study of mixed fibrolamellar hepatocellular carcinoma. Annals of Oncology. 2016 Mar 30. pii: mdw135.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (1)


48. Hundal J, Carreno BM, Petti AA, Linette GP, Griffith OL, Mardis ER, Griffith M. pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens. Genome Medicine. 2016 Jan 29;8(1):11.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (8)


47. Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL; Open Regulatory Annotation Consortium. ORegAnno 3.0: a community-driven resource for curated regulatory annotation. Nucleic Acids Research. 2016 Jan 4;44(D1):D126-32.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (5)


46. Wagner AH, Coffman AC, Ainscough BJ, Spies NC, Skidmore ZL, Campbell KM, Krysiak K, Pan D, McMichael JF, Eldred JM, Walker JR, Wilson RK, Mardis ER, Griffith M*, Griffith OL*. DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic Acids Research. 2016 Jan 4;44(D1):D1036-44.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (32)


45. Lu C, Riedell P, Miller CA, Hagemann IS, Westervelt P, Ozenberger BA, OLaughlin M, Magrini V, Demeter RT, Duncavage EJ, Griffith M, Griffith OL, Wartman LD. A common founding clone with TP53 and PTEN mutations gives rise to a concurrent germ cell tumor and acute megakaryoblastic leukemia. Cold Spring Harbor Molecular Case Studies .
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44. Griffith M*, Miller CA*, Griffith OL, Krysiak KC, Skidmore ZL, Ramu A, Walker JR, Dang H, Trani L, Larson DE, Demeter RT, Wendl MC, McMichael JF, Austin R, Magrini V, McGrath S, Ly A, Kulkarni S, Cordes M, Fronick CC, Fulton RS, Maher CA, Ding L, Klco JM, Mardis ER, Ley TJ, Wilson RK. Optimizing cancer genome sequencing and analysis. Cell Systems. 2015 Sep 23;1(3):210-223.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (23)


43. Klco JM, Miller CA, Griffith M, Petti A, Spencer DH, Ketkar-Kulkarni S, Wartman LD, Christopher M, Lamprecht TL, Helton NM, Duncavage EJ, Payton JE, Baty J, Heath SE, Griffith OL, Shen D, Hundal J, Chang GS, Fulton R, O'Laughlin M, Fronick C, Magrini V, Demeter RT, Larson DE, Kulkarni S, Ozenberger BA, Welch JS, Walter MJ, Graubert TA, Westervelt P, Radich JP, Link DC, Mardis ER, DiPersio JF, Wilson RK, Ley TJ. Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia. JAMA. Journal of the American Medical Association. 2015 Aug 25;314(8):811-22.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (65)


42. Griffith M, Walker JR, Spies NC, Ainscough BJ, Griffith OL. Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud. PLoS Computational Biology. 2015 Aug 6;11(8):e1004393.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (7)


41. Griffith M*, Griffith OL*, Smith SM*, Ramu A, Callaway MB, Brummett AM, Kiwala MJ, Coffman AC, Regier AA, Oberkfell BJ, Sanderson GE, Mooney TP, Nutter NG, Belter EA, Du F, Long RL, Abbott TE, Ferguson IT, Morton DL, Burnett MM, Weible JV, Peck JB, Dukes A, McMichael JF, Lolofie JT, Derickson BR, Hundal J, Skidmore ZL, Ainscough BJ, Dees ND, Schierding WS, Kandoth C, Kim KH, Lu C, Harris CC, Maher N, Maher CA, Magrini VJ, Abbott BS, Chen K, Clark E, Das I, Fan X, Hawkins AE, Hepler TG, Wylie TN, Leonard SM, Schroeder WE, Shi X, Carmichael LK, Weil MR, Wohlstadter RW, Stiehr G, McLellan MD, Pohl CS, Miller CA, Koboldt DC, Walker JR, Eldred JM, Larson DE, Dooling DJ, Ding L, Mardis ER, Wilson RK. Genome Modeling System: A Knowledge Management Platform for Genomics. PLoS Computational Biology. 2015 Jul 9;11(7):e1004274.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (17)


40. Shirai CL, Ley JN, White BS, Kim S, Tibbitts J, Shao J, Ndonwi M, Wadugu B, Duncavage EJ, Okeyo-Owuor T, Liu T, Griffith M, McGrath S, Magrini V, Fulton RS, Fronick C, O'Laughlin M, Graubert TA, Walter MJ. Mutant U2AF1 Expression Alters Hematopoiesis and Pre-mRNA Splicing In Vivo. Cancer Cell. 2015 May 11;27(5):631-43.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (52)


39. Okeyo-Owuor T, White BS, Chatrikhi R, Mohan DR, Kim S, Griffith M, Ding L, Ketkar-Kulkarni S, Hundal J, Laird KM, Kielkopf CL, Ley TJ, Walter MJ, Graubert TA. U2AF1 mutations alter sequence specificity of pre-mRNA binding and splicing. Leukemia. 2015 Apr;29(4):909-17.
abstract | full text | pdf | altmetric stats | google scholar citations (20)


38. Solga AC, Pong WW, Walker J, Wylie T, Magrini V, Apicelli AJ, Griffith M, Griffith OL, Kohsaka S, Wu GF, Brody DL, Mardis ER, Gutmann DH. RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease. Glia. 2015 Apr;63(4):531-48.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (11)


37. Gascard P, Bilenky M, Sigaroudinia M, Zhao J, Li L, Carles A, Delaney A, Tam A, Kamoh B, Cho S, Griffith M, Chu A, Robertson G, Cheung D, Li I, Heravi-Moussavi A, Moksa M, Mingay M, Hussainkhel A, Davis B, Nagarajan RP, Hong C, Echipare L, O'Geen H, Hangauer MJ, Cheng JB, Neel D, Hu D, McManus MT, Moore R, Mungall A, Ma Y, Plettner P, Ziv E, Wang T, Farnham PJ, Jones SJ, Marra MA, Tlsty TD, Costello JF, Hirst M. Epigenetic and transcriptional determinants of the human breast. Nature Communications. 2015 Feb 18;6:6351.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (12)


36. Juric D, Castel P, Griffith M, Griffith OL, Won HH, Ellis H, Ebbesen SH, Ainscough BJ, Ramu A, Iyer G, Shah RH, Huynh T, Mino-Kenudson M, Sgroi D, Isakoff S, Thabet A, Elamine L, Solit DB, Lowe SW, Quadt C, Peters M, Derti A, Schegel R, Huang A, Mardis ER, Berger MF, Baselga J, Scaltriti M. Convergent loss of PTEN leads to clinical resistance to a PI(3)Ka inhibitor. Nature. 2015 Feb 12;518(7538):240-4.
abstract | full text | pdf | altmetric stats | google scholar citations (92)


35. Ding L, Kim M, Kanchi KL, Dees ND, Lu C, Griffith M, Fenstermacher D, Sung H, Miller CA, Goetz B, Wendl MC, Griffith O, Cornelius LA, Linette GP, McMichael JF, Sondak VK, Fields RC, Ley TJ, Mule JJ, Wilson RK, Weber JS. Clonal architectures and driver mutations in metastatic melanomas. PLoS One. 2014 Nov 13;9(11):e111153.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (26)


34. Alder O, Cullum R, Lee S, Kan AC, Wei W, Yi Y, Garside VC, Bilenky M, Griffith M, Morrissy AS, Robertson GA, Thiessen N, Zhao Y, Chen Q, Pan D, Jones SJ, Marra MA, Hoodless PA. Hippo Signaling Influences HNF4A and FOXA2 Enhancer Switching during Hepatocyte Differentiation. Cell Reports. 2014 Oct 9;9(1):261-71.
abstract | full text | pdf | altmetric stats | google scholar citations (20)


33. Miller CA, White BS, Dees ND, Griffith M, Griffith OL, Welch JS, Vij R, Tomasson MH, Graubert TA, Walter MJ, Ellis MJ, Schierding W, DiPersio JF, Ley TJ, Mardis ER, Wilson RK, and Ding L. SciClone: Inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution.. PLoS Computational Biology. 2014 Aug 7;10(8):e1003665.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (85)


32. Cabanski CR, Magrini V, Griffith M, Griffith OL, McGrath S, Zhang J, Walker J, Ly A, Demeter R, Fulton RS, Pong WW, Gutmann DH, Govindan R, Mardis ER, Maher CA. cDNA hybrid capture improves transcriptome analysis on low-input and archived samples. Journal of Molecular Diagnostics. 2014 Jul;16(4):440-51.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (21)


31. Tucker T, Zahir FR, Griffith M, Delaney A, Chai D, Tsang E, Lemyre E, Dobrzeniecka S, Marra M, Eydoux P, Langlois S, Hamdan FF, Michaud JL, Friedman JM. Single exon-resolution targeted chromosomal microarray analysis of known and candidate intellectual disability genes. European Journal of Human Genetics. 2014 Jun;22(6):792-800.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (19)


30. Klco JM, Spencer DH, Miller CA, Griffith M, Lamprecht TL, O'Laughlin M, Fronick C, Magrini V, Demeter RT, Fulton RS, Eades WC, Link DC, Graubert TA, Walter MJ, Mardis ER, Dipersio JF, Wilson RK, Ley TJ. Functional heterogeneity of genetically defined subclones in acute myeloid leukemia. Cancer Cell. 2014 Mar 17;25(3):379-92.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (133)


29. Griffith M, Griffith OL et al. Nucleic Acid Databases in Concise Encyclopaedia of Bioinformatics and Computational Biology. Wiley. Hancock JM, Zvelebil MJ, editors. John Wiley & Sons. Hoboken, NJ. 2014. ISBN: 978-1-118-59816-0.
full text


28. Daemen A, Griffith OL, Wang NJ, Korkola JE, Heiser LM, Enache OM, Sanborn Z, Pepin F, Durinck S, Griffith M, Hur JS, Huh N, Chung J, Cope L, Fackler MJ, Umbricht C, Sukumar S, Seth P, Sukhatme VP, Jakkula LR, Lu Y, Mills GB, Cho RJ, Collisson E, vant Veer LJ, Spellman PT, Gray JW. Modeling precision treatment of breast cancer. Genome Biology.. 2013 Oct 31;14(10):R110.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (67)


27. Griffith M, Griffith OL, Coffman AC, Weible JV, Koval J, Das I, McMichael JF, Callaway MB, Eldred J, Subramanian J, Govindan R, Kumar R, Bose R, Ding L, Larson D, Dooling D, Smith S, Ley T, Mardis ER, Wilson RK. DGIdb : Mining the druggable genome for personalized medicine.. Nature Methods. 2013 Dec;10(12):1209-10.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (137)


26. Pong WW, Walker J, Wylie T, Magrini V, Luo J, Emnett RJ, Choi J, Cooper ML, Griffith M, Griffith OL, Rubin JB, Fuller GN, Piwnica-Worms D, Feng X, Hambardzumyan D, DiPersio JF, Mardis ER, Gutmann DH. F11R is a novel monocyte prognostic biomarker for malignant glioma. PLoS One. 2013 Oct 11;8(10):e77571.
abstract | full text | pdf | altmetric stats | google scholar citations (13)


25. Griffith M, Mwenifumbo JC, Cheung PY, Paul JE, Pugh TJ, Tang MJ, Chittaranjan S, Morin RD, Asano JK, Ally AA, Miao L, Lee A, Chan SY, Taylor G, Severson T, Hou YC, Griffith OL, Cheng GS, Novik K, Moore R, Luk M, Owen D, Brown CJ, Morin GB, Gill S, Tai IT, Marra MA. Novel mRNA isoforms and mutations of uridine monophosphate synthetase and 5-fluorouracil resistance in colorectal cancer.. Pharmacogenomics Journal. 2013 Apr;13(2):148-58.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (10)


24. Cheng SWG, Kuzyk MA, Moradian A, Ichu TA, Chang VCD, Tien JF, Vollett SE, Griffith M, Marra MA, Morin GB. Interaction of cyclin-dependent kinase 12/CrkRS with cyclin K1 is required for the phosphorylation of the C-terminal domain of RNA polymerase II. Molecular and Cellular Biology. 2012 Nov;32(22):4691-704.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (30)


23. Govindan R, Ding L, Griffith M, Subramanian J, Dees ND, Kanchi KL, Maher C, Fulton R, Fulton L, Wallis J, Chen K, Walker J, McDonald S, Bose R, Ornitz D, Xiong D, You M, Dooling DJ, Watson M, Mardis ER, Wilson RK. Genomic landscape of non-small cell lung cancer. Cell. 2012 Sep 14;150(6):1121-34.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (510)


22. Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V, McPherson A, Shumansky K, Crisan A, Giuliany R, Heravi-Moussavi A, Rosner J, Lai D, Birol I, Varhol R, Tam A, Dhalla N, Zeng T, Ma K, Chan SK, Griffith M, Moradian A, Cheng SW, Morin GB, Watson P, Gelmon K, Chia S, Chin SF, Curtis C, Rueda OM, Pharoah PD, Damaraju S, Mackey J, Hoon K, Harkins T, Tadigotla V, Sigaroudinia M, Gascard P, Tlsty T, Costello JF, Meyer IM, Eaves CJ, Wasserman WW, Jones S, Huntsman D, Hirst M, Caldas C, Marra MA, Aparicio S. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature 2012 Apr 4; 486(7403):395-9.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (948)


21. Morrissy AS, Griffith M, Marra MA. Extensive relationship between antisense transcription and alternative splicing in the human genome. Genome Research. 2011 Aug;21(8):1203-12. Epub 2011 Jun 30.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (43)


20. Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (760)


19. McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Computional Biology. 2011 May;7(5):e1001138. Epub 2011 May 19.
abstract | full text | pdf | supp. materials | DeFuse website | altmetric stats | google scholar citations (258)


18. Robertson G, Schein J, Chiu R, Corbett R, Field M, Jackman SD, Mungall K, Lee S, Okada HM, Qian JQ, Griffith M, Raymond A, Thiessen N, Cezard T, Butterfield Y, Newsome R, Chan SK, Varhol R, Kamoh B, Prabhu A, Tam A, Zhao Y, Moore R, Hirst M, Marra MA, Jones SJM, Hoodless PA, Birol I. De novo assembly and analysis of RNA-seq data. Nature Methods. 2010 Nov;7(11):909-12. Epub 2010 Oct 10.
abstract | full text | pdf | supp. materials | Trans-ABySS site | altmetric stats | google scholar citations (521)


17. Griffith M, Griffith OL, Mwenifumbo J, Morin RD, Goya R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan SY, Li I, McDonald H, Teague K, Zhao Y, Zeng T, Delaney AD, Hirst M, Morin GB, Jones SJM, Tai IT, Marra MA. Alternative expression analysis by RNA sequencing. Nature Methods. 2010 Oct;7(10):843-847.
abstract | full text | pdf | supp. materials | site | news & views | altmetric stats | google scholar citations (215)


16. Jones SJM, Laskin J, Li YY, Griffith OL, An J, Bilenky M, Butterfield YS, Cezard T, Chuah E, Corbett R, Fejes A, Griffith M, Yee J, Martin M, Mayo M, Melnyk N, Morin RD, Pugh TJ, Severson T, Shah SP, Sutcliffe M, Tam A, Terry J, Thiessen N, Thomson T, Varhol R, Zeng T, Zhao Y, Moore RA, Huntsman DG, Birol I, Hirst M, Holt RA and Marra MA. Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors. Genome Biology. 2010, 11:R82.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (128)


15. Griffith M. Methods for transcript variant discovery and alternative expression analysis - Application to the study of 5-FU resistance in colorectal cancer.. PhD Dissertation. 2010. University of British Columbia, Vancouver, BC, Canada.
pdf


14. MGC Project Team, Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, Robinson C, Mandich A, Derge JG, Lewis J, Shoaf D, Collins FS, Jang W, Wagner L, Shenmen CM, Misquitta L, Schaefer CF, Buetow KH, Bonner TI, Yankie L, Ward M, Phan L, Astashyn A, Brown G, Farrell C, Hart J, Landrum M, Maidak BL, Murphy M, Murphy T, Rajput B, Riddick L, Webb D, Weber J, Wu W, Pruitt KD, Maglott D, Siepel A, Brejova B, Diekhans M, Harte R, Baertsch R, Kent J, Haussler D, Brent M, Langton L, Comstock CL, Stevens M, Wei C, van Baren MJ, Salehi-Ashtiani K, Murray RR, Ghamsari L, Mello E, Lin C, Pennacchio C, Schreiber K, Shapiro N, Marsh A, Pardes E, Moore T, Lebeau A, Muratet M, Simmons B, Kloske D, Sieja S, Hudson J, Sethupathy P, Brownstein M, Bhat N, Lazar J, Jacob H, Gruber CE, Smith MR, McPherson J, Garcia AM, Gunaratne PH, Wu J, Muzny D, Gibbs RA, Young AC, Bouffard GG, Blakesley RW, Mullikin J, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Hirst M, Zeng T, Tse K, Moksa M, Deng M, Ma K, Mah D, Pang J, Taylor G, Chuah E, Deng A, Fichter K, Go A, Lee S, Wang J, Griffith M, Morin R, Moore RA, Mayo M, Munro S, Wagner S, Jones SJ, Holt RA, Marra MA, Lu S, Yang S, Hartigan J, Graf M, Wagner R, Letovksy S, Pulido JC, Robison K, Esposito D, Hartley J, Wall VE, Hopkins RF, Ohara O, Wiemann S. The completion of the Mammalian Gene Collection (MGC). Genome Research 2009 Dec;19(12):2324-33.
abstract | full text | pdf | supplementary materials | MGC website | altmetric stats | google scholar citations (66)


13. Kuchenbauer F, Morin RD, Argiropoulos B, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu A, Zhao Y, McDonald H, Zeng T, Hirst M, Marra MA and Humphries RK. In depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Research 2008 Nov;18(11):1787-97. Epub 2008 Oct 10.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (164)


12. Pugh TJ, Delaney AD, Farnoud N, Flibotte S, Griffith M, Li HI, Farinha P, Gascoyne RD, Marra MA. Impact of whole genome amplification on analysis of copy number variants. Nucleic Acids Research. 2008. Aug. 36(13):e80.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (73)


11. Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu A, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ and Marra MA. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research. 2008. Apr; 18(4):610-21.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (835)


10. Griffith M, Tang MJ, Griffith OL, Morin RD, Chan SY, Asano JK, Zeng T, Flibotte S, Ally A, Baross A, Hirst M, Jones SJM, Morin GB, Tai IT and Marra MA. ALEXA - A microarray design platform for alternative expression analysis. Nature Methods. 2008 Feb. 5(2):118.
abstract | full text | pdf | supp. materials | ALEXA arrays website | altmetric stats | google scholar citations (30)


9. Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M, Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, Blanco E, Ticoll A, Lithwick S, Portales-Casamar E, Donaldson IJ, Robertson G, Wadelius C, De Bleser P, Vlieghe D, Halfon MS, Wasserman W, Hardison R, Bergman CM, Jones SJ; The Open Regulatory Annotation Consortium. ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Research. 2008. 36:D107-13.
abstract | full text | pdf | ORegAnno website | altmetric stats | google scholar citations (198)


8. Griffith M and Marra MA. Alternative expression analysis: experimental and bioinformatic approaches for the analysis of transcript diversity. 2007. Chapter 12. Genes Genomes and Genomics, Volume 2. p201-242. Regency Publications. New Delhi.
pdf | google scholar citations (4)


7. Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delany A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, and Jones SJM. Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. BMC Genomics. 2006 Sep 29;7(1):246.
abstract | full text | pdf | supplementary materials | altmetric stats | google scholar citations (138)


6. Morin RD, Chang E, Petrescu A, Liao N, Griffith M, Kirkpatrick R, Butterfield YS, Young AC, Stott J, Barber S, Babakaiff R, Dickson MC, Matsuo C, Wong D, Yang GS, Smailus DE, Wetherby KD, Kwong PN, Grimwood J, Brinkley III CP, Brown-John M, Reddix-Dugue ND, Mayo M, Schmutz J, Beland J, Park M, Gibson S, Olson T, Bouffard GG, Tsai M, Featherstone R, Chand S, Siddiqui AS, Jang W, Lee E, Steven L. Klein SL, Blakesley RW, Zeeberg BR, Narasimhan S, Weinstein JN, Pennacchio CP, Myers RM, Green ED, Wagner L, Gerhard DS, Marra MA, Jones SJM, and Holt RA. Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis. Genome Research. 2006 Jun;16(6):796-803.
abstract | full text | pdf | supplementary materials | XGC website | altmetric stats | google scholar citations (63)


5. Hirst M, Astell CR, Griffith M, Coughlin SM, Moksa M, Zeng T, Smailus DE, Holt RA, Jones S, Marra MA, Petric M, Krajden M, Lawrence D, Mak A, Chow R, Skowronski DM, Tweed SA, Goh S, Brunham RC, Robinson J, Bowes V, Sojonky K, Byrne SK, Li Y, Kobasa D, Booth T, and Paetzel M. Novel avian influenza H7N3 strain outbreak, British Columbia. Emerging Infectious Diseases. 2004 Dec;10(12):2192-5.
abstract | full text | pdf | altmetric stats | google scholar citations (191)


4. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J; MGC Project Team. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Research. 2004 Oct;14(10B):2121-7.
abstract | full text | pdf | supp. materials | MGC website | altmetric stats | google scholar citations (417)


3. Baross A, Butterfield YS, Coughlin SM, Zeng T, Griffith M, Griffith OL, Petrescu AS, Smailus DE, Khattra J, McDonald HL, McKay SJ, Moksa M, Holt RA, and Marra MA. Systematic recovery and analysis of full-ORF human cDNA clones. Genome Research. 2004 Oct;14(10B):2083-92.
abstract | full text | pdf | supplementary materials | MGC website | altmetric stats | google scholar citations (37)


2. Griffith M and Gietz RD. Escherichia coli endA deletion strain for use in two-hybrid shuttle vector selection. Biotechniques. 2003 Aug;35(2):272-4, 276, 278.
abstract | pdf | altmetric stats | google scholar citations (6)


1. Griffith M. Genetic Modification of the Escherichia coli Strain DH5alpha to Allow the Selection of Plasmids Carrying Complementary Yeast Genes. Honors thesis. 2002. University of Winnipeg. Winnipeg, MB, Canada.
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